Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6843

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15210 and 15211 are separated by 122 nucleotides15211 and 15212 are separated by 282 nucleotides mRNA_6842: 15210 - K02605 ORC3 origin recognition complex subunit 3, at 248,976 to 251,916 15210 mRNA_6843: 15211 - BLAST protein of unknown function [Taphrina deformans PYCC ..., at 252,039 to 252,813 15211 mRNA_6844: 15212 - K12183 TSG101, STP22, VPS23 ESCRT-I complex subunit TSG101, at 253,096 to 258,115 15212

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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251,863 + -0.7
252,000 - -0.8
252,000 - -0.4
252,147 + 15211 mRNA_6843 0.14 +1.0
252,160 - 15211 mRNA_6843 0.16 +2.2
252,165 + 15211 mRNA_6843 0.16 +0.8
252,315 + 15211 mRNA_6843 0.36 +0.9
252,324 - 15211 mRNA_6843 0.37 +1.0
252,330 - 15211 mRNA_6843 0.38 -0.3
252,416 - 15211 mRNA_6843 0.49 +4.2
252,599 - 15211 mRNA_6843 0.72 +0.8
252,610 - 15211 mRNA_6843 0.74 -3.2
253,184 - +0.5
253,309 + +0.3
253,494 - +0.2
253,665 + 15212 mRNA_6844 0.11 -0.8
253,724 + 15212 mRNA_6844 0.13 +0.2
253,733 - 15212 mRNA_6844 0.13 +0.7
253,761 - 15212 mRNA_6844 0.13 +0.7
253,788 + 15212 mRNA_6844 0.14 -2.5

Or see this region's nucleotide sequence