Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6868

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15235 and 15236 are separated by 44 nucleotides15236 and 15237 are separated by 682 nucleotides mRNA_6867: 15235 - KOG4121 Nuclear pore complex, Nup133 component (sc Nup133), at 310,458 to 312,954 15235 mRNA_6868: 15236 - Hypothetical Protein, at 312,999 to 313,640 15236 mRNA_6869: 15237 - K06125 COQ2 4-hydroxybenzoate polyprenyltransferase, at 314,323 to 315,416 15237

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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312,213 - 15235 mRNA_6867 0.70 -2.2
312,271 + 15235 mRNA_6867 0.73 -1.5
312,459 - 15235 mRNA_6867 0.80 +0.5
312,546 - 15235 mRNA_6867 0.84 +0.6
312,571 + 15235 mRNA_6867 0.85 -1.0
312,835 - +0.6
313,092 - 15236 mRNA_6868 0.14 +0.4
313,190 + 15236 mRNA_6868 0.30 +0.3
313,195 - 15236 mRNA_6868 0.31 -0.9
313,441 + 15236 mRNA_6868 0.69 +1.6
313,458 - 15236 mRNA_6868 0.71 -0.7
313,466 + 15236 mRNA_6868 0.73 -0.6
313,563 + 15236 mRNA_6868 0.88 +0.5
313,585 + +1.0
313,702 + -0.1
313,705 - -0.2
313,706 - -1.7
313,710 - +0.3
313,710 + -0.6
313,712 + -0.6
313,731 + +1.5
313,741 + -0.6
313,908 + +0.2
313,985 - -0.0
314,020 + +0.3

Or see this region's nucleotide sequence