Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6881

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15248 and 15249 are separated by 431 nucleotides15249 and 15250 are separated by 418 nucleotides mRNA_6880: 15248 - K00641 metX homoserine O-acetyltransferase, at 342,593 to 344,205 15248 mRNA_6881: 15249 - Hypothetical Protein, at 344,637 to 347,114 15249 mRNA_6882: 15250 - Hypothetical Protein, at 347,533 to 348,159 15250

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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343,753 + 15248 mRNA_6880 0.72 +3.0
343,801 - 15248 mRNA_6880 0.75 -0.9
343,821 - 15248 mRNA_6880 0.76 -0.9
343,982 - 15248 mRNA_6880 0.86 -2.5
344,024 - 15248 mRNA_6880 0.89 -2.7
344,110 - -1.2
344,127 - -2.4
344,129 - -1.9
344,141 + -1.4
344,314 + -4.2
344,422 + +0.2
344,423 + +0.2
344,428 + -3.1
344,430 + -2.2
344,453 - -0.1
344,462 + -1.2
344,463 - -2.7
344,470 + +1.0
344,475 + -2.4
344,546 - -1.4
344,551 + +2.3
344,585 + +0.0
344,585 + -0.9
344,587 + -1.3
344,587 + +1.2
344,615 - -0.2
344,713 + -0.4
344,726 + +1.0
345,068 + 15249 mRNA_6881 0.17 +0.5
345,145 - 15249 mRNA_6881 0.21 +1.2
345,178 + 15249 mRNA_6881 0.22 +0.1
345,198 + 15249 mRNA_6881 0.23 +0.7
345,199 + 15249 mRNA_6881 0.23 +0.2
345,349 - 15249 mRNA_6881 0.29 +0.8
345,357 + 15249 mRNA_6881 0.29 -0.5
345,367 + 15249 mRNA_6881 0.29 -0.4
345,432 - 15249 mRNA_6881 0.32 +0.5
345,465 - 15249 mRNA_6881 0.33 -0.0
345,488 + 15249 mRNA_6881 0.34 -0.0
345,489 - 15249 mRNA_6881 0.34 -1.2
345,499 + 15249 mRNA_6881 0.35 +0.2
345,510 - 15249 mRNA_6881 0.35 -0.1
345,624 - 15249 mRNA_6881 0.40 +0.3
345,630 + 15249 mRNA_6881 0.40 -2.2
345,641 - 15249 mRNA_6881 0.41 +0.2
345,642 + 15249 mRNA_6881 0.41 -0.2
345,643 + 15249 mRNA_6881 0.41 +0.1
345,644 + 15249 mRNA_6881 0.41 +1.5
345,645 - 15249 mRNA_6881 0.41 +0.4
345,649 - 15249 mRNA_6881 0.41 -0.2
345,658 + 15249 mRNA_6881 0.41 -1.2
345,662 - 15249 mRNA_6881 0.41 -1.0
345,665 - 15249 mRNA_6881 0.41 -0.7
345,666 - 15249 mRNA_6881 0.42 +0.3
345,667 + 15249 mRNA_6881 0.42 -1.0
345,668 - 15249 mRNA_6881 0.42 -3.1
345,674 - 15249 mRNA_6881 0.42 -0.1
345,676 + 15249 mRNA_6881 0.42 +0.4
345,677 + 15249 mRNA_6881 0.42 -0.2
345,679 - 15249 mRNA_6881 0.42 -0.8
345,680 + 15249 mRNA_6881 0.42 +0.1
345,687 - 15249 mRNA_6881 0.42 +1.1
345,687 - 15249 mRNA_6881 0.42 -0.0
345,688 + 15249 mRNA_6881 0.42 -0.6
345,688 + 15249 mRNA_6881 0.42 +0.2
345,693 - 15249 mRNA_6881 0.43 +0.4
345,702 + 15249 mRNA_6881 0.43 +1.1
345,705 + 15249 mRNA_6881 0.43 -0.0
345,707 - 15249 mRNA_6881 0.43 +0.0
345,709 + 15249 mRNA_6881 0.43 +0.0
345,721 + 15249 mRNA_6881 0.44 +0.0
345,724 + 15249 mRNA_6881 0.44 +1.6
345,725 - 15249 mRNA_6881 0.44 +2.6
345,736 - 15249 mRNA_6881 0.44 -1.5
345,736 - 15249 mRNA_6881 0.44 +0.5
345,738 - 15249 mRNA_6881 0.44 +0.3
345,741 + 15249 mRNA_6881 0.45 -0.2
345,749 + 15249 mRNA_6881 0.45 -0.2
345,750 - 15249 mRNA_6881 0.45 -0.1
345,753 + 15249 mRNA_6881 0.45 -1.0
345,767 + 15249 mRNA_6881 0.46 -0.7
345,769 + 15249 mRNA_6881 0.46 -0.9
345,832 + 15249 mRNA_6881 0.48 +0.5
345,853 - 15249 mRNA_6881 0.49 -0.3
345,854 - 15249 mRNA_6881 0.49 -1.0
345,855 - 15249 mRNA_6881 0.49 -1.3
345,856 - 15249 mRNA_6881 0.49 -1.0
345,862 + 15249 mRNA_6881 0.49 -0.3
345,865 + 15249 mRNA_6881 0.50 +0.0
345,873 - 15249 mRNA_6881 0.50 +0.0
345,873 + 15249 mRNA_6881 0.50 -2.1
345,878 + 15249 mRNA_6881 0.50 +0.1
345,880 - 15249 mRNA_6881 0.50 -2.3
345,881 - 15249 mRNA_6881 0.50 -0.2
345,883 + 15249 mRNA_6881 0.50 +0.8
345,902 - 15249 mRNA_6881 0.51 -1.1
345,915 - 15249 mRNA_6881 0.52 +1.4
345,935 - 15249 mRNA_6881 0.52 +0.3
345,935 - 15249 mRNA_6881 0.52 +1.4
345,939 - 15249 mRNA_6881 0.53 -2.9
345,951 - 15249 mRNA_6881 0.53 -0.3
345,955 - 15249 mRNA_6881 0.53 +1.3
345,958 - 15249 mRNA_6881 0.53 -0.8
345,958 - 15249 mRNA_6881 0.53 +2.8
345,959 + 15249 mRNA_6881 0.53 -0.8
345,962 + 15249 mRNA_6881 0.53 +1.7
345,965 - 15249 mRNA_6881 0.54 -0.2
345,967 - 15249 mRNA_6881 0.54 -1.5
345,973 - 15249 mRNA_6881 0.54 +2.7
345,974 + 15249 mRNA_6881 0.54 -2.0
345,977 - 15249 mRNA_6881 0.54 -1.3
345,979 - 15249 mRNA_6881 0.54 +0.0
345,979 + 15249 mRNA_6881 0.54 +1.0
345,979 + 15249 mRNA_6881 0.54 +0.3
345,981 + 15249 mRNA_6881 0.54 -1.5
345,986 - 15249 mRNA_6881 0.54 -0.4
345,986 + 15249 mRNA_6881 0.54 -0.5
345,988 + 15249 mRNA_6881 0.55 -0.9
345,990 - 15249 mRNA_6881 0.55 +0.1
345,990 - 15249 mRNA_6881 0.55 +0.2
345,993 + 15249 mRNA_6881 0.55 -1.3
345,999 + 15249 mRNA_6881 0.55 -0.3
346,001 + 15249 mRNA_6881 0.55 +0.0
346,004 + 15249 mRNA_6881 0.55 +0.2
346,008 + 15249 mRNA_6881 0.55 +0.6
346,008 + 15249 mRNA_6881 0.55 -0.7
346,010 + 15249 mRNA_6881 0.55 -0.0
346,016 - 15249 mRNA_6881 0.56 +0.6
346,027 - 15249 mRNA_6881 0.56 -0.5
346,036 + 15249 mRNA_6881 0.56 +0.3
346,055 + 15249 mRNA_6881 0.57 +1.1
346,189 + 15249 mRNA_6881 0.63 -0.4
346,260 + 15249 mRNA_6881 0.65 -1.5
346,260 - 15249 mRNA_6881 0.65 +0.4
346,273 - 15249 mRNA_6881 0.66 +0.8
346,298 + 15249 mRNA_6881 0.67 -1.1
346,391 - 15249 mRNA_6881 0.71 -0.1
346,398 + 15249 mRNA_6881 0.71 +0.8
346,429 + 15249 mRNA_6881 0.72 +0.2
346,507 - 15249 mRNA_6881 0.75 +0.8
346,517 + 15249 mRNA_6881 0.76 -2.4
346,763 - 15249 mRNA_6881 0.86 +0.2
346,868 + +0.1
346,874 + +0.1
347,116 - -0.6
347,448 - +2.5
347,453 + +0.3
347,453 - -1.1
347,589 + -1.2
347,595 + +0.0
347,611 + 15250 mRNA_6882 0.12 -0.8
347,873 + 15250 mRNA_6882 0.54 +1.3
348,022 + 15250 mRNA_6882 0.78 +0.9

Or see this region's nucleotide sequence