Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6961

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15328 and 15329 are separated by 162 nucleotides15329 and 15330 are separated by 49 nucleotides mRNA_6960: 15328 - K01469 OPLAH, OXP1, oplAH 5-oxoprolinase (ATP-hydrolysing), at 540,769 to 543,741 15328 mRNA_6961: 15329 - Hypothetical Protein, at 543,904 to 547,836 15329 mRNA_6962: 15330 - K03132 TAF7 transcription initiation factor TFIID subunit 7, at 547,886 to 549,459 15330

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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543,367 + 15328 mRNA_6960 0.87 -0.0
543,625 - -1.2
543,638 - +0.6
543,797 - -1.1
544,113 + -0.4
544,371 - 15329 mRNA_6961 0.12 -0.8
544,494 - 15329 mRNA_6961 0.15 +1.4
544,494 - 15329 mRNA_6961 0.15 +0.1
544,506 + 15329 mRNA_6961 0.15 -2.0
544,580 + 15329 mRNA_6961 0.17 +0.5
544,794 - 15329 mRNA_6961 0.23 +0.1
544,815 - 15329 mRNA_6961 0.23 -0.9
544,933 - 15329 mRNA_6961 0.26 +0.1
545,008 - 15329 mRNA_6961 0.28 -0.4
545,111 + 15329 mRNA_6961 0.31 -0.1
545,401 + 15329 mRNA_6961 0.38 -2.0
545,547 + 15329 mRNA_6961 0.42 -1.2
545,563 + 15329 mRNA_6961 0.42 +0.2
545,654 + 15329 mRNA_6961 0.44 -0.4
545,696 - 15329 mRNA_6961 0.46 -1.4
545,823 - 15329 mRNA_6961 0.49 -1.6
545,844 - 15329 mRNA_6961 0.49 -0.5
545,846 + 15329 mRNA_6961 0.49 -1.0
545,967 + 15329 mRNA_6961 0.52 -0.2
545,996 - 15329 mRNA_6961 0.53 -0.7
546,038 + 15329 mRNA_6961 0.54 +0.4
546,144 - 15329 mRNA_6961 0.57 -1.7
546,176 + 15329 mRNA_6961 0.58 +0.6
546,176 - 15329 mRNA_6961 0.58 -1.1
546,605 - 15329 mRNA_6961 0.69 +1.1
547,218 - 15329 mRNA_6961 0.84 -0.4
547,237 - 15329 mRNA_6961 0.85 -0.6
547,478 + -1.0
547,498 + +0.6
547,613 - -0.2
547,647 + -0.0
547,653 + +0.2
547,662 + -0.2
547,828 + -0.6
548,254 - 15330 mRNA_6962 0.23 -0.8

Or see this region's nucleotide sequence