Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7173

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15540 and 15541 are separated by 320 nucleotides15541 and 15542 are separated by 392 nucleotides mRNA_7172: 15540 - K01408 IDE, ide insulysin, at 1,045,325 to 1,049,371 15540 mRNA_7173: 15541 - K02891 RP-L22e, RPL22 large subunit ribosomal protein L22e, at 1,049,692 to 1,050,738 15541 mRNA_7174: 15542 - K11131 DKC1, NOLA4, CBF5 H/ACA ribonucleoprotein complex subunit 4, at 1,051,131 to 1,053,156 15542

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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1,048,704 + 15540 mRNA_7172 0.83 +1.8
1,048,819 - 15540 mRNA_7172 0.86 -1.5
1,048,859 - 15540 mRNA_7172 0.87 -0.0
1,049,147 + -0.4
1,049,285 - -1.6
1,049,458 + -1.0
1,049,459 + -0.3
1,049,478 - +0.0
1,050,754 + -1.3
1,050,907 - -2.5
1,050,915 - -2.0
1,050,926 + -1.1
1,050,930 - -2.2
1,050,938 + -1.4
1,050,940 + -1.7
1,050,946 + -1.1
1,050,948 + -1.2

Or see this region's nucleotide sequence