Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7181

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15548 and 15549 are separated by 495 nucleotides15549 and 15550 are separated by 251 nucleotides mRNA_7180: 15548 - Hypothetical Protein, at 1,062,711 to 1,064,267 15548 mRNA_7181: 15549 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 1,064,763 to 1,065,253 15549 mRNA_7182: 15550 - HMMPfam-WD domain, G-beta repeat-PF00400,ProSitePatterns-Trp-Asp (WD) repeats signature.-PS00678,ProSiteProfiles-Trp-Asp (WD) repeats profile.-PS50082,ProSiteProfiles-Trp-Asp (WD) repeats circular profile.-PS50294,SMART-WD40 repeats-SM00320,SUPERFAMILY--SSF50978, at 1,065,505 to 1,067,037 15550

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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1,063,835 + 15548 mRNA_7180 0.72 -2.8
1,064,045 + 15548 mRNA_7180 0.86 +0.5
1,064,285 - +0.4
1,064,546 - +0.5
1,064,603 - -2.3
1,064,675 - -2.2
1,064,767 - -0.1
1,064,769 + -0.2
1,064,774 + -0.7
1,064,783 + -0.1
1,064,820 - 15549 mRNA_7181 0.12 +2.5
1,064,838 + 15549 mRNA_7181 0.15 -0.1
1,064,945 + 15549 mRNA_7181 0.37 +1.0
1,064,945 - 15549 mRNA_7181 0.37 +0.0
1,064,950 + 15549 mRNA_7181 0.38 -1.3
1,065,034 - 15549 mRNA_7181 0.55 -0.2
1,065,189 - 15549 mRNA_7181 0.87 +0.7
1,065,365 + -0.3
1,065,469 + -2.7
1,065,813 + 15550 mRNA_7182 0.20 -1.0
1,065,931 + 15550 mRNA_7182 0.28 +2.3
1,065,953 - 15550 mRNA_7182 0.29 -2.7
1,066,234 + 15550 mRNA_7182 0.48 -2.0

Or see this region's nucleotide sequence