Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7263

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15630 and 15631 are separated by 573 nucleotides15631 and 15632 are separated by 222 nucleotides mRNA_7262: 15630 - HMMPfam-Peptidase M50B-like-PF13398, at 1,248,701 to 1,250,915 15630 mRNA_7263: 15631 - K00615 E2.2.1.1, tktA, tktB transketolase, at 1,251,489 to 1,254,335 15631 mRNA_7264: 15632 - Hypothetical Protein, at 1,254,558 to 1,258,564 15632

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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1,250,601 + 15630 mRNA_7262 0.86 -0.2
1,250,692 + 15630 mRNA_7262 0.90 -0.0
1,250,692 - 15630 mRNA_7262 0.90 +0.5
1,250,773 - +1.9
1,250,805 + -0.0
1,250,817 + -0.4
1,250,904 - +1.5
1,250,913 - +0.4
1,250,920 + -1.5
1,250,941 + +0.7
1,250,948 + -2.6
1,250,950 + -0.1
1,250,988 - -2.1
1,251,240 - +0.2
1,251,244 - +0.5
1,251,252 - -2.0
1,251,255 - +0.1
1,251,269 - +0.1
1,251,277 + +1.0
1,251,278 - -0.8
1,251,278 + -0.1
1,251,296 - +0.4
1,251,387 - -0.1
1,251,397 - +0.5
1,251,413 - +0.5
1,251,417 - -3.0
1,252,876 + 15631 mRNA_7263 0.49 +0.0
1,254,469 + -2.3
1,254,487 - -0.5
1,254,609 + -0.2
1,254,633 - -0.3
1,254,640 + -0.9
1,254,695 - +1.8
1,254,784 + +0.4
1,254,951 - +0.4
1,254,957 + +0.4
1,255,007 + 15632 mRNA_7264 0.11 +0.6
1,255,030 + 15632 mRNA_7264 0.12 +0.4
1,255,103 + 15632 mRNA_7264 0.14 -0.0
1,255,139 - 15632 mRNA_7264 0.14 +0.8

Or see this region's nucleotide sequence