Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7311

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15678 and 15679 are separated by 652 nucleotides15679 and 15680 are separated by 390 nucleotides mRNA_7310: 15678 - BLAST cytochrome P450 3A4 [Neurospora crassa OR74A], at 1,370,309 to 1,371,999 15678 mRNA_7311: 15679 - K00940 ndk, NME nucleoside-diphosphate kinase, at 1,372,652 to 1,373,595 15679 mRNA_7312: 15680 - HMMPfam-Protein of unknown function (DUF3429)-PF11911, at 1,373,986 to 1,375,689 15680

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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1,371,764 + 15678 mRNA_7310 0.86 +2.2
1,372,142 + +1.1
1,372,154 + -1.9
1,372,247 - +1.7
1,372,429 - -1.2
1,372,443 + -3.3
1,372,615 + -4.3
1,372,784 - 15679 mRNA_7311 0.14 +0.1
1,373,578 + +1.1
1,373,751 - -0.8
1,373,891 + +0.5
1,373,899 + +0.4
1,373,900 + -1.2
1,374,122 - -0.4
1,374,234 - 15680 mRNA_7312 0.15 -0.0
1,374,374 - 15680 mRNA_7312 0.23 -0.1
1,374,489 + 15680 mRNA_7312 0.30 -2.2
1,374,511 + 15680 mRNA_7312 0.31 +0.3

Or see this region's nucleotide sequence