Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7320

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15688 and 15689 are separated by 410 nucleotides mRNA_7320: 15688 - BLAST genomic scaffold, msy-sf-7 protein, putative [Rhizoct..., at 106 to 1,532 15688 mRNA_7321: 15689 - KOG1339 Aspartyl protease, at 1,943 to 3,763 15689

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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14 + -0.1
14 + +0.2
14 + +1.4
14 + -1.7
22 + -1.4
29 + -0.9
35 + -1.4
45 + -2.0
66 + +1.2
68 + -1.3
71 - +1.1
105 + -1.3
120 - -2.1
120 + +1.4
121 - +0.7
122 - +0.1
126 + +0.9
126 + -0.2
131 - +0.1
135 - -2.2
135 + -0.6
135 + +0.1
135 + +0.7
135 - +2.2
142 - +0.3
148 + -2.4
153 + +0.6
159 - +0.7
159 - +1.1
161 + -0.5
168 - -0.1
195 + +0.5
233 + +0.2
263 + 15688 mRNA_7320 0.11 -0.5
267 - 15688 mRNA_7320 0.11 -1.5
301 - 15688 mRNA_7320 0.14 -0.7
310 - 15688 mRNA_7320 0.14 -0.5
313 + 15688 mRNA_7320 0.15 -1.2
313 + 15688 mRNA_7320 0.15 +0.2
319 + 15688 mRNA_7320 0.15 +0.9
322 - 15688 mRNA_7320 0.15 +0.9
340 - 15688 mRNA_7320 0.16 -0.5
345 + 15688 mRNA_7320 0.17 +0.0
357 + 15688 mRNA_7320 0.18 -0.5
359 + 15688 mRNA_7320 0.18 -0.6
365 - 15688 mRNA_7320 0.18 -0.7
401 - 15688 mRNA_7320 0.21 +2.1
401 - 15688 mRNA_7320 0.21 +0.3
401 + 15688 mRNA_7320 0.21 -0.4
405 + 15688 mRNA_7320 0.21 +0.6
415 + 15688 mRNA_7320 0.22 +1.0
428 - 15688 mRNA_7320 0.23 +1.6
461 - 15688 mRNA_7320 0.25 -0.6
462 + 15688 mRNA_7320 0.25 -1.0
466 - 15688 mRNA_7320 0.25 +1.1
482 + 15688 mRNA_7320 0.26 +1.8
488 - 15688 mRNA_7320 0.27 -1.3
573 - 15688 mRNA_7320 0.33 -0.1
594 - 15688 mRNA_7320 0.34 -0.8
595 + 15688 mRNA_7320 0.34 +1.7
595 + 15688 mRNA_7320 0.34 -1.6
625 - 15688 mRNA_7320 0.36 +0.1
644 + 15688 mRNA_7320 0.38 -0.4
644 + 15688 mRNA_7320 0.38 -2.5
648 + 15688 mRNA_7320 0.38 +0.5
654 - 15688 mRNA_7320 0.38 -0.6
654 + 15688 mRNA_7320 0.38 -0.1
713 + 15688 mRNA_7320 0.43 -2.5
753 - 15688 mRNA_7320 0.45 +0.2
756 - 15688 mRNA_7320 0.46 -0.1
763 + 15688 mRNA_7320 0.46 +0.8
765 + 15688 mRNA_7320 0.46 +0.0
778 + 15688 mRNA_7320 0.47 +0.1
811 - 15688 mRNA_7320 0.49 -0.3
921 + 15688 mRNA_7320 0.57 -1.2
945 + 15688 mRNA_7320 0.59 +0.8
1,059 + 15688 mRNA_7320 0.67 +0.5
1,167 + 15688 mRNA_7320 0.74 +0.4
1,174 + 15688 mRNA_7320 0.75 -0.2
1,182 - 15688 mRNA_7320 0.75 +0.3
1,196 + 15688 mRNA_7320 0.76 -0.0
1,218 + 15688 mRNA_7320 0.78 +0.6
1,258 + 15688 mRNA_7320 0.81 -0.4
1,326 - 15688 mRNA_7320 0.85 +0.5
1,360 + 15688 mRNA_7320 0.88 -0.5
1,366 + 15688 mRNA_7320 0.88 -1.0
1,497 - +0.7
1,518 + -0.1
1,582 + -1.5
1,666 - -0.7
1,675 + +1.1
1,789 - +0.5
1,907 + -0.6
1,929 + -0.5
1,948 + +0.9
2,105 - -1.6
2,297 - 15689 mRNA_7321 0.19 +0.5
2,508 - 15689 mRNA_7321 0.31 -0.7
2,521 + 15689 mRNA_7321 0.32 +0.4
2,526 + 15689 mRNA_7321 0.32 +1.1
2,529 - 15689 mRNA_7321 0.32 +0.1
2,529 - 15689 mRNA_7321 0.32 -1.9

Or see this region's nucleotide sequence