Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7463

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15830 and 15831 are separated by 800 nucleotides15831 and 15832 are separated by 594 nucleotides mRNA_7462: 15830 - HMMPfam-F-box-like-PF12937,SUPERFAMILY--SSF52047, at 334,859 to 336,377 15830 mRNA_7463: 15831 - Hypothetical Protein, at 337,178 to 338,673 15831 mRNA_7464: 15832 - BLAST expressed protein [Schizophyllum commune H4-8], at 339,268 to 340,751 15832

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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336,241 - -1.3
336,506 - -1.8
336,523 + -1.6
336,972 - +0.1
336,978 - -0.3
336,982 + +0.2
336,983 + +0.0
336,994 + -0.6
336,994 + -2.5
336,994 + +1.1
337,004 - -0.6
337,007 + -1.1
337,011 + -1.7
337,020 + +0.3
337,048 + +0.1
337,151 - +0.0
337,230 + -2.1
337,703 + 15831 mRNA_7463 0.35 -2.9
337,933 + 15831 mRNA_7463 0.50 +2.0
338,003 - 15831 mRNA_7463 0.55 +1.0
338,202 + 15831 mRNA_7463 0.68 -1.4
338,239 - 15831 mRNA_7463 0.71 -0.4
338,305 + 15831 mRNA_7463 0.75 -1.8
338,470 + 15831 mRNA_7463 0.86 -4.1
338,738 + -0.6
338,859 + -1.9
338,873 + -1.1
338,925 + +0.9
339,035 - +0.9
339,038 - -1.7
339,174 + -0.0
339,180 - -1.6
339,200 - +1.0
339,331 - -0.8
339,338 + -0.2
339,367 - -0.5
339,482 - 15832 mRNA_7464 0.14 -1.6
339,527 + 15832 mRNA_7464 0.17 +0.5
339,529 + 15832 mRNA_7464 0.18 -0.3
339,673 - 15832 mRNA_7464 0.27 +1.3

Or see this region's nucleotide sequence