Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7540

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15907 and 15908 are separated by 212 nucleotides15908 and 15909 are separated by 218 nucleotides mRNA_7539: 15907 - K07300 chaA, CAX Ca2+-H+ antiporter, at 519,946 to 522,544 15907 mRNA_7540: 15908 - K01012 bioB biotin synthase, at 522,757 to 524,526 15908 mRNA_7541: 15909 - K04564 SOD2 superoxide dismutase, Fe-Mn family, at 524,745 to 525,930 15909

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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521,827 - 15907 mRNA_7539 0.72 +0.5
522,156 + 15907 mRNA_7539 0.85 +0.6
522,287 + +0.6
522,303 - +0.2
522,387 - -1.3
522,402 - -1.5
522,451 - +0.3
522,484 + -1.2
522,623 - +0.5
522,625 + -2.2
522,627 + +0.7
522,628 + +0.4
522,630 - -2.1
522,633 + -0.6
522,646 + +2.2
522,653 - +0.1
522,659 + -1.7
522,671 + +0.0
522,682 - +0.2
522,786 - -0.5
522,811 - -1.8
524,570 - -0.1
524,574 - +1.2
524,705 - -1.4
524,717 - +1.9
524,720 + +0.6
524,720 + -1.3
524,734 + -3.7
524,742 - -2.4
524,744 - -0.1
524,749 + -1.2
524,751 + -2.1
524,752 + -0.6
524,752 + -0.5
524,858 - +0.5
524,858 - -0.8
524,860 + -0.2
524,860 + -2.4
524,861 + -1.1
524,861 + -0.7
524,861 + -1.2
524,861 + -0.8
524,861 + -2.5
524,861 + -0.8
524,861 + -1.0
524,861 + -2.4
524,861 + +0.5
524,861 + -0.5
524,862 + -1.5
524,862 - -2.1
524,864 + 15909 mRNA_7541 0.10 -1.0
524,864 - 15909 mRNA_7541 0.10 -2.7
524,864 - 15909 mRNA_7541 0.10 -2.2
524,864 - 15909 mRNA_7541 0.10 -1.4
524,864 - 15909 mRNA_7541 0.10 -1.3
524,864 - 15909 mRNA_7541 0.10 -3.1
524,864 - 15909 mRNA_7541 0.10 -2.8
524,867 + 15909 mRNA_7541 0.10 -1.7
524,867 + 15909 mRNA_7541 0.10 -0.4
524,879 - 15909 mRNA_7541 0.11 -0.9
524,894 + 15909 mRNA_7541 0.13 -2.4
524,984 - 15909 mRNA_7541 0.20 -1.9
525,034 - 15909 mRNA_7541 0.24 -0.6
525,039 + 15909 mRNA_7541 0.25 -1.2
525,044 + 15909 mRNA_7541 0.25 -1.3
525,118 + 15909 mRNA_7541 0.31 -2.6
525,147 + 15909 mRNA_7541 0.34 -1.6
525,173 - 15909 mRNA_7541 0.36 +0.3
525,181 - 15909 mRNA_7541 0.37 -1.5
525,186 - 15909 mRNA_7541 0.37 -1.9
525,225 + 15909 mRNA_7541 0.40 -2.2
525,230 + 15909 mRNA_7541 0.41 -0.9
525,266 - 15909 mRNA_7541 0.44 -1.2
525,290 + 15909 mRNA_7541 0.46 -4.2
525,510 - 15909 mRNA_7541 0.65 -1.1

Or see this region's nucleotide sequence