Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7595

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15962 and 15963 are separated by 252 nucleotides15963 and 15964 are separated by 56 nucleotides mRNA_7594: 15962 - K00106 XDH xanthine dehydrogenase/oxidase, at 640,991 to 646,168 15962 mRNA_7595: 15963 - K02151 ATPeV1F, ATP6S14 V-type H+-transporting ATPase subunit F, at 646,421 to 647,106 15963 mRNA_7596: 15964 - HMMPfam-MYND finger-PF01753,ProSitePatterns-Zinc finger MYND-type signature.-PS01360,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 647,163 to 648,088 15964

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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645,521 + 15962 mRNA_7594 0.87 -0.1
645,675 + -1.4
645,999 + -2.9
646,100 - +0.3
646,142 + -0.5
646,267 - -0.5
646,267 - +0.4
646,273 + -1.8
646,390 + -1.6
647,267 - 15964 mRNA_7596 0.11 +0.4
647,280 + 15964 mRNA_7596 0.13 -0.3
647,281 + 15964 mRNA_7596 0.13 -0.3
647,281 - 15964 mRNA_7596 0.13 -1.1
647,287 + 15964 mRNA_7596 0.13 -1.2
647,441 - 15964 mRNA_7596 0.30 -0.3
647,733 + 15964 mRNA_7596 0.62 -1.2
647,767 + 15964 mRNA_7596 0.65 +0.2
648,019 + -0.9
648,022 - -0.4
648,036 + -0.8
648,036 + -2.8

Or see this region's nucleotide sequence