Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7609

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15976 and 15977 are separated by 65 nucleotides15977 and 15978 are separated by 353 nucleotides mRNA_7608: 15976 - K10847 XPA DNA-repair protein complementing XP-A cells, at 666,565 to 667,853 15976 mRNA_7609: 15977 - KOG3239 Density-regulated protein related to translation initiation factor 1 (eIF-1/SUI1), at 667,919 to 668,964 15977 mRNA_7610: 15978 - KOG0548 Molecular co-chaperone STI1, at 669,318 to 671,371 15978

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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667,141 + 15976 mRNA_7608 0.45 +1.5
667,180 + 15976 mRNA_7608 0.48 -0.5
667,417 + 15976 mRNA_7608 0.66 +0.5
667,427 - 15976 mRNA_7608 0.67 -1.4
667,698 - 15976 mRNA_7608 0.88 -0.8
667,799 + +0.0
668,433 - 15977 mRNA_7609 0.49 -1.7
668,859 + 15977 mRNA_7609 0.90 +1.2
668,982 + -1.2
668,989 + +0.5
668,995 - -1.3
669,007 + +1.2
669,018 + -0.3
669,153 + -0.0
669,154 + -0.5
669,159 - +1.0
669,583 - 15978 mRNA_7610 0.13 -0.9
669,592 + 15978 mRNA_7610 0.13 -0.1
669,872 + 15978 mRNA_7610 0.27 -0.9

Or see this region's nucleotide sequence