Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7737

Experiment: Sorted Low BODIPY Gate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16104 and 16105 are separated by 583 nucleotides16105 and 16106 are separated by 148 nucleotides mRNA_7736: 16104 - HMMPfam-Glyoxal oxidase N-terminus-PF07250,HMMPfam-Domain of unknown function (DUF1929)-PF09118,SUPERFAMILY--SSF50965,SUPERFAMILY--SSF81296, at 956,261 to 958,930 16104 mRNA_7737: 16105 - HMMPfam-Antibiotic biosynthesis monooxygenase-PF03992,SUPERFAMILY--SSF54909, at 959,514 to 960,315 16105 mRNA_7738: 16106 - HMMPfam-BTB/POZ domain-PF00651,ProSiteProfiles-BTB domain profile.-PS50097, at 960,464 to 961,733 16106

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
remove
958,988 - +0.0
958,996 + -0.6
958,996 + +0.4
958,996 + +0.3
959,012 + +0.0
959,013 - +3.6
959,017 + +0.2
959,139 - -0.1
959,147 - +0.4
959,155 + -2.0
959,164 + +0.9
959,189 + -2.0
959,221 + -0.6
959,233 + -0.0
959,298 - +0.6
959,334 - -0.2
959,354 - -1.1
959,355 - +0.7
959,357 + -0.0
959,391 - -1.0
959,396 - -0.4
959,438 + -0.1
959,443 - -1.9
959,454 + -1.0
959,472 - -0.8
959,646 - 16105 mRNA_7737 0.16 -0.1
959,726 - 16105 mRNA_7737 0.26 -0.6
959,874 + 16105 mRNA_7737 0.45 -0.9
961,150 + 16106 mRNA_7738 0.54 +0.8
961,157 - 16106 mRNA_7738 0.55 +1.4
961,215 + 16106 mRNA_7738 0.59 -0.7

Or see this region's nucleotide sequence