Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7759

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16126 and 16127 are separated by 194 nucleotides mRNA_7758: 16126 - ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257, at 999,313 to 1,000,093 16126 mRNA_7759: 16127 - K11824 AP2A AP-2 complex subunit alpha, at 1,000,288 to 1,003,990 16127

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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999,534 + 16126 mRNA_7758 0.28 +0.1
999,694 - 16126 mRNA_7758 0.49 +0.1
999,700 - 16126 mRNA_7758 0.50 +0.0
999,792 - 16126 mRNA_7758 0.61 -0.0
999,828 - 16126 mRNA_7758 0.66 -0.8
999,838 - 16126 mRNA_7758 0.67 +1.5
1,000,174 + -4.0
1,000,430 + -1.9
1,000,568 + -3.5
1,000,899 + 16127 mRNA_7759 0.17 -2.5
1,001,586 + 16127 mRNA_7759 0.35 -1.3
1,001,674 + 16127 mRNA_7759 0.37 +0.8
1,001,889 - 16127 mRNA_7759 0.43 -1.3
1,002,110 + 16127 mRNA_7759 0.49 -0.0
1,002,462 - 16127 mRNA_7759 0.59 -0.3
1,002,897 - 16127 mRNA_7759 0.70 -1.0
1,003,646 + -1.0
1,003,927 + -0.4
1,003,933 + -3.0
1,004,074 - +0.9
1,004,201 - -1.0
1,004,206 + +1.2
1,004,234 - +0.4
1,004,342 + -0.9

Or see this region's nucleotide sequence