Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7806

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16173 and 16174 are separated by 354 nucleotides16174 and 16175 are separated by 452 nucleotides mRNA_7805: 16173 - K12389 BTS, CLN3 battenin, at 1,113,037 to 1,115,028 16173 mRNA_7806: 16174 - Hypothetical Protein, at 1,115,383 to 1,115,856 16174 mRNA_7807: 16175 - K01304 pcp pyroglutamyl-peptidase, at 1,116,309 to 1,117,210 16175

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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1,114,520 - 16173 mRNA_7805 0.74 +0.6
1,114,817 - 16173 mRNA_7805 0.89 -0.3
1,114,939 - +0.0
1,114,939 - +1.2
1,115,061 - -2.7
1,115,094 + +0.3
1,115,140 + +0.3
1,115,142 + -0.1
1,115,151 + -1.9
1,115,152 - -0.6
1,115,154 - +0.3
1,115,154 - -0.4
1,115,155 + -1.5
1,115,158 - -0.7
1,115,176 - +0.3
1,115,202 - +2.4
1,115,295 - -2.4
1,115,451 - 16174 mRNA_7806 0.14 +0.1
1,115,471 - 16174 mRNA_7806 0.19 -0.7
1,115,745 + 16174 mRNA_7806 0.76 +0.2
1,115,773 + 16174 mRNA_7806 0.82 -0.9
1,115,908 - +1.4
1,115,930 - +0.5
1,116,462 - 16175 mRNA_7807 0.17 -1.2
1,116,512 - 16175 mRNA_7807 0.23 +0.0
1,116,686 - 16175 mRNA_7807 0.42 -1.3
1,116,847 + 16175 mRNA_7807 0.60 -0.4

Or see this region's nucleotide sequence