Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7869

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16236 and 16237 are separated by 188 nucleotides16237 and 16238 are separated by 384 nucleotides mRNA_7868: 16236 - Hypothetical Protein, at 1,262,755 to 1,264,857 16236 mRNA_7869: 16237 - KOG4366 Predicted thioesterase, at 1,265,046 to 1,266,017 16237 mRNA_7870: 16238 - HMMPfam-Putative S-adenosyl-L-methionine-dependent methyltransferase-PF02636,SUPERFAMILY--SSF53335, at 1,266,402 to 1,268,243 16238

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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1,264,266 - 16236 mRNA_7868 0.72 -1.3
1,264,304 - 16236 mRNA_7868 0.74 -0.1
1,264,423 + 16236 mRNA_7868 0.79 -1.6
1,264,427 - 16236 mRNA_7868 0.80 +1.0
1,265,135 + +0.6
1,265,183 + 16237 mRNA_7869 0.14 +0.7
1,265,187 + 16237 mRNA_7869 0.15 +2.9
1,265,894 + 16237 mRNA_7869 0.87 +0.5
1,266,006 - +1.2
1,266,016 - -0.7
1,266,040 - -1.2
1,266,051 + -0.2
1,266,143 + -0.2
1,266,151 - -0.6
1,266,154 - +1.8
1,266,165 - +0.6
1,266,172 + +0.6
1,266,282 + -0.0
1,266,302 + -0.1
1,266,307 + -1.1
1,266,311 - +0.1
1,266,318 - -0.5
1,266,318 + -0.4
1,266,319 - +0.4
1,266,330 + +0.2
1,266,331 - -1.4
1,266,361 - +1.7
1,266,380 - +0.3

Or see this region's nucleotide sequence