Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7883

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16250 and 16251 are separated by 661 nucleotides mRNA_7882: 16250 - HMMPfam-Protein of unknown function (DUF4243)-PF14027, at 1,289,991 to 1,293,240 16250 mRNA_7883: 16251 - Hypothetical Protein, at 1,293,902 to 1,295,426 16251

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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1,293,319 + -0.9
1,293,373 + -1.4
1,293,453 - -0.1
1,293,474 + +0.5
1,293,507 + +0.4
1,293,561 - -0.8
1,293,580 + -2.7
1,293,594 + -0.8
1,293,597 - -1.7
1,293,632 - -1.6
1,293,637 - -0.9
1,293,641 + +0.9
1,293,645 + +0.6
1,293,649 + -0.1
1,293,652 + -3.0
1,293,659 - -0.2
1,293,666 + -1.3
1,293,669 + -2.4
1,293,676 + +1.8
1,293,677 - +1.9
1,293,680 + -1.3
1,293,682 - +0.1
1,293,696 - +0.7
1,293,708 + -1.6
1,293,823 + +1.4
1,293,824 - -2.0
1,293,825 - +1.0
1,293,839 - +2.6
1,293,843 - -0.4
1,293,852 + +0.2
1,293,857 + +0.4
1,293,858 - +0.6
1,293,871 + -1.5
1,293,873 - -0.3
1,293,973 - -1.8
1,294,122 + 16251 mRNA_7883 0.14 +1.0
1,294,151 + 16251 mRNA_7883 0.16 -2.7
1,294,168 + 16251 mRNA_7883 0.17 +0.7
1,294,182 + 16251 mRNA_7883 0.18 +0.7
1,294,340 - 16251 mRNA_7883 0.29 -1.0
1,294,402 + 16251 mRNA_7883 0.33 -0.2
1,294,972 + 16251 mRNA_7883 0.70 +0.4
1,295,134 - 16251 mRNA_7883 0.81 -1.2
1,295,421 + -0.4
1,295,431 - -0.5
1,295,614 + +1.3
1,295,813 + +0.6
1,295,980 + +0.9
1,295,987 - +0.7
1,296,137 - +0.3
1,296,391 - +0.3

Or see this region's nucleotide sequence