Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7911

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16279 and 16280 are separated by 760 nucleotides mRNA_7911: 16279 - K03015 RPB7, POLR2G DNA-directed RNA polymerase II subunit RPB7, at 1,441 to 2,386 16279 mRNA_7912: 16280 - K11434 PRMT1 type I protein arginine methyltransferase, at 3,147 to 4,682 16280

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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453 + -0.7
453 + -0.4
464 + -0.2
486 + -1.2
682 - +1.7
711 + +0.3
735 + -0.5
746 + -0.8
768 + -1.7
872 - -0.5
1,045 - -1.2
1,166 + -1.7
2,601 - +0.9
2,624 + +0.5
2,636 - -0.7
2,650 - -2.3
2,781 + -1.4
2,783 - +0.3
2,928 + -0.8
2,928 + +1.7
2,928 + -0.6
2,929 + -0.2
2,934 - -2.4
2,947 - -1.9
2,951 + +0.5
2,951 + +0.3
2,954 - -0.5
3,110 + +0.1
3,236 + -0.1
3,375 - 16280 mRNA_7912 0.15 -3.2

Or see this region's nucleotide sequence