Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7947

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16314 and 16315 are separated by 435 nucleotides16315 and 16316 are separated by 329 nucleotides mRNA_7946: 16314 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 71,933 to 72,812 16314 mRNA_7947: 16315 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 73,248 to 74,114 16315 mRNA_7948: 16316 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 74,444 to 75,195 16316

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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72,297 + 16314 mRNA_7946 0.41 +2.5
72,304 + 16314 mRNA_7946 0.42 -0.6
72,322 + 16314 mRNA_7946 0.44 -0.5
72,414 - 16314 mRNA_7946 0.55 +1.5
72,415 + 16314 mRNA_7946 0.55 +0.3
72,433 + 16314 mRNA_7946 0.57 +0.7
72,450 + 16314 mRNA_7946 0.59 +0.9
72,471 - 16314 mRNA_7946 0.61 +1.4
72,506 - 16314 mRNA_7946 0.65 +0.5
72,571 + 16314 mRNA_7946 0.72 -1.0
72,573 - 16314 mRNA_7946 0.73 -0.6
72,579 - 16314 mRNA_7946 0.73 +0.8
72,580 + 16314 mRNA_7946 0.74 +0.4
72,740 - -0.1
72,815 + -0.0
72,859 + -0.6
72,903 - -0.7
72,907 - +0.1
73,058 + +0.7
73,063 - -2.2
73,074 + -1.0
73,187 - +1.2
73,222 + +0.5
73,236 + -0.6
73,339 + 16315 mRNA_7947 0.10 -0.6
73,340 - 16315 mRNA_7947 0.11 +0.9
73,357 - 16315 mRNA_7947 0.13 +0.4
73,529 - 16315 mRNA_7947 0.32 -1.9
73,530 + 16315 mRNA_7947 0.33 -1.8
73,537 + 16315 mRNA_7947 0.33 +1.0
73,779 - 16315 mRNA_7947 0.61 +1.8
73,805 + 16315 mRNA_7947 0.64 -1.2
74,097 - -0.6
74,108 + +1.1
74,119 + +0.5
74,345 - +0.8
74,350 + -0.6
74,359 - +2.2
74,363 - -0.3
74,366 + +0.1
74,380 + -0.1
74,500 - +0.9
74,504 + +0.9
74,570 - 16316 mRNA_7948 0.17 +0.3
74,594 - 16316 mRNA_7948 0.20 -0.2
74,934 + 16316 mRNA_7948 0.65 -0.4

Or see this region's nucleotide sequence