Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7964

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16331 and 16332 are separated by 423 nucleotides16332 and 16333 are separated by 427 nucleotides mRNA_7963: 16331 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 106,769 to 107,651 16331 mRNA_7964: 16332 - HMMPfam-MYND finger-PF01753,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 108,075 to 108,950 16332 mRNA_7965: 16333 - HMMPfam-MYND finger-PF01753,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 109,378 to 110,240 16333

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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107,263 + 16331 mRNA_7963 0.56 -0.9
107,420 + 16331 mRNA_7963 0.74 +3.4
107,430 + 16331 mRNA_7963 0.75 -2.0
107,451 - 16331 mRNA_7963 0.77 -1.2
107,467 + 16331 mRNA_7963 0.79 +0.1
107,604 + +0.6
107,618 - +0.0
107,635 + +0.5
107,886 + +0.9
107,910 - -1.9
107,916 + +0.0
108,012 - +0.2
108,015 - +0.1
108,019 - +1.4
108,178 + 16332 mRNA_7964 0.12 -4.2
108,345 - 16332 mRNA_7964 0.31 +0.5
108,370 + 16332 mRNA_7964 0.34 +0.6
108,552 + 16332 mRNA_7964 0.54 +0.7
108,585 - 16332 mRNA_7964 0.58 -0.1
108,623 + 16332 mRNA_7964 0.63 +0.2
108,713 + 16332 mRNA_7964 0.73 -2.4
108,748 - 16332 mRNA_7964 0.77 -3.1
108,863 + +0.8
108,868 - +0.2
108,917 - +0.1
108,933 + +0.9
108,988 + -2.4
108,988 + +1.1
109,049 + -1.2
109,158 + +0.3
109,451 + +1.6
109,515 - 16333 mRNA_7965 0.16 +1.7
109,619 - 16333 mRNA_7965 0.28 +0.9
109,670 + 16333 mRNA_7965 0.34 -0.3
109,752 + 16333 mRNA_7965 0.43 -0.6
109,758 - 16333 mRNA_7965 0.44 -1.1
109,771 + 16333 mRNA_7965 0.46 +1.4
109,913 + 16333 mRNA_7965 0.62 -1.3
109,920 + 16333 mRNA_7965 0.63 +0.5
109,950 - 16333 mRNA_7965 0.66 -0.0

Or see this region's nucleotide sequence