Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7980

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16347 and 16348 are separated by 234 nucleotides16348 and 16349 are separated by 383 nucleotides mRNA_7979: 16347 - KOG0504 FOG Ankyrin repeat, at 137,884 to 138,763 16347 mRNA_7980: 16348 - KOG0550 Molecular chaperone (DnaJ superfamily), at 138,998 to 141,142 16348 mRNA_7981: 16349 - KOG2504 Monocarboxylate transporter, at 141,526 to 143,466 16349

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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138,045 + 16347 mRNA_7979 0.18 -2.2
138,870 + -0.4
138,979 - -0.9
139,086 - -0.7
139,127 - -0.4
139,266 - 16348 mRNA_7980 0.12 +0.1
139,905 - 16348 mRNA_7980 0.42 -0.5
139,964 - 16348 mRNA_7980 0.45 -0.2
140,239 - 16348 mRNA_7980 0.58 -1.8
140,241 + 16348 mRNA_7980 0.58 -1.9
140,257 - 16348 mRNA_7980 0.59 +1.5
140,286 - 16348 mRNA_7980 0.60 +1.2
140,292 + 16348 mRNA_7980 0.60 -0.3
140,371 - 16348 mRNA_7980 0.64 -1.1
140,592 - 16348 mRNA_7980 0.74 +0.4
141,086 + -0.5
141,097 + +0.5
141,338 + -4.6
141,415 + +1.3
141,462 + +1.2
141,470 + -0.6
141,616 + -1.4
141,792 - 16349 mRNA_7981 0.14 -1.3
141,919 - 16349 mRNA_7981 0.20 -0.1

Or see this region's nucleotide sequence