Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8027

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16394 and 16395 are separated by 264 nucleotides16395 and 16396 are separated by 11 nucleotides mRNA_8026: 16394 - K03515 REV1 DNA repair protein REV1, at 239,573 to 243,561 16394 mRNA_8027: 16395 - HMMPfam-MYND finger-PF01753,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 243,826 to 244,717 16395 mRNA_8028: 16396 - K06100 SYMPK symplekin, at 244,729 to 248,815 16396

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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242,890 - 16394 mRNA_8026 0.83 -2.2
243,022 - 16394 mRNA_8026 0.86 +0.1
243,065 - 16394 mRNA_8026 0.88 -1.3
243,107 - 16394 mRNA_8026 0.89 +0.1
243,115 + 16394 mRNA_8026 0.89 +0.0
243,180 + -0.7
243,214 + -0.8
243,245 - -0.4
243,255 + -0.8
243,320 + +0.5
243,341 + +0.2
243,356 - -0.0
243,503 - -0.3
243,505 + -0.6
243,515 - -0.9
243,553 + +0.1
243,659 + -0.1
243,827 - -0.1
243,974 - 16395 mRNA_8027 0.17 +0.2
243,976 + 16395 mRNA_8027 0.17 -1.0
243,978 - 16395 mRNA_8027 0.17 +0.7
244,011 - 16395 mRNA_8027 0.21 -0.2
244,081 - 16395 mRNA_8027 0.29 -0.4
244,106 - 16395 mRNA_8027 0.31 +0.2
244,141 - 16395 mRNA_8027 0.35 +0.2
244,685 - +0.8
244,700 - +1.5
244,837 - -0.4

Or see this region's nucleotide sequence