Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8130

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16497 and 16498 are separated by 242 nucleotides16498 and 16499 are separated by 438 nucleotides mRNA_8129: 16497 - KOG0543 FKBP-type peptidyl-prolyl cis-trans isomerase, at 487,427 to 488,552 16497 mRNA_8130: 16498 - BLAST transcription factor [Pseudozyma hubeiensis SY62], at 488,795 to 491,438 16498 mRNA_8131: 16499 - KOG2431 1, 2-alpha-mannosidase, at 491,877 to 495,566 16499

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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487,890 - 16497 mRNA_8129 0.41 -0.3
488,052 + 16497 mRNA_8129 0.56 +0.6
488,191 + 16497 mRNA_8129 0.68 +0.4
488,195 - 16497 mRNA_8129 0.68 -0.9
488,274 + 16497 mRNA_8129 0.75 +0.4
488,468 + +0.1
488,600 + -0.2
488,609 - -2.9
488,621 + -2.6
488,646 - -1.1
488,820 + +1.0
489,072 + 16498 mRNA_8130 0.10 -1.0
489,083 + 16498 mRNA_8130 0.11 +0.9
489,354 + 16498 mRNA_8130 0.21 -1.7
489,372 + 16498 mRNA_8130 0.22 -0.2
489,633 - 16498 mRNA_8130 0.32 -2.6
490,082 - 16498 mRNA_8130 0.49 -2.3
490,486 - 16498 mRNA_8130 0.64 -0.2
490,556 + 16498 mRNA_8130 0.67 -2.4
490,700 + 16498 mRNA_8130 0.72 -0.6
491,069 + 16498 mRNA_8130 0.86 -0.3
491,304 + +2.1
491,411 - -1.3
491,559 + +0.0
491,732 - -1.0
491,740 + -2.6
491,877 - -0.6
492,218 + +1.0
492,362 + 16499 mRNA_8131 0.13 -1.3
492,380 + 16499 mRNA_8131 0.14 +1.1

Or see this region's nucleotide sequence