Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8188

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16555 and 16556 are separated by 285 nucleotides16556 and 16557 are separated by 258 nucleotides mRNA_8187: 16555 - K10949 KDELR ER lumen protein retaining receptor, at 624,425 to 625,437 16555 mRNA_8188: 16556 - K05012 CLCN3_4_5 chloride channel 3/4/5, at 625,723 to 629,622 16556 mRNA_8189: 16557 - HMMPfam-alpha/beta hydrolase fold-PF07859,SUPERFAMILY--SSF53474, at 629,881 to 631,255 16557

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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625,501 - +1.0
625,616 + -1.0
625,620 + -0.0
625,627 - -0.6
625,809 + +0.1
625,936 - -1.5
625,938 - +0.5
627,696 + 16556 mRNA_8188 0.51 -1.2
628,571 - 16556 mRNA_8188 0.73 -3.5
628,579 - 16556 mRNA_8188 0.73 -1.1
628,717 + 16556 mRNA_8188 0.77 -1.1
629,300 + +1.4
629,320 + -1.4
629,858 + +0.6
630,012 + +0.6
630,023 - 16557 mRNA_8189 0.10 -0.6
630,334 - 16557 mRNA_8189 0.33 -0.5
630,454 - 16557 mRNA_8189 0.42 -1.9
630,461 + 16557 mRNA_8189 0.42 +0.5
630,464 + 16557 mRNA_8189 0.42 -2.2
630,605 - 16557 mRNA_8189 0.53 +1.2

Or see this region's nucleotide sequence