Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8230

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16597 and 16598 are separated by 916 nucleotides16598 and 16599 are separated by 505 nucleotides mRNA_8229: 16597 - K04630 GNAI guanine nucleotide-binding protein G(i) subunit alpha, at 720,080 to 721,710 16597 mRNA_8230: 16598 - K09668 LARGE glycosyltransferase-like protein LARGE, at 722,627 to 724,673 16598 mRNA_8231: 16599 - KOG0927 Predicted transporter (ABC superfamily), at 725,179 to 727,142 16599

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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721,755 - -3.7
721,764 + +0.3
721,789 + -0.8
721,790 - +0.3
721,798 + -1.1
721,798 + -0.2
721,800 + +0.2
721,803 - -0.8
721,810 - -0.4
721,817 + -0.2
721,886 + -0.5
721,890 - -0.8
721,942 - +0.1
721,949 + +0.1
721,955 - +0.2
721,960 - -0.7
721,967 + -0.3
721,977 + -0.3
722,068 - -1.9
722,076 + -1.9
722,078 + +0.1
722,079 + +0.3
722,079 + +0.7
722,092 - +0.2
722,098 - +0.6
722,099 + +0.3
722,099 - +0.2
722,107 - +0.5
722,109 - -1.5
722,115 - -0.5
722,116 + -0.4
722,116 + -2.5
722,154 - +1.5
722,156 + +0.4
722,156 - -1.4
722,157 + -1.3
722,173 - -0.1
722,178 + -1.8
722,179 + +0.9
722,183 + -0.8
722,184 + -1.4
722,184 + +1.3
722,187 - -2.4
722,189 + -3.2
722,194 - -0.1
722,197 + -0.3
722,198 + -0.0
722,201 + -0.5
722,204 - -1.5
722,212 - -2.0
722,222 - -0.4
722,225 - -0.8
722,238 + +0.5
722,265 + -0.6
722,270 - -1.0
722,278 - +0.1
722,285 + -1.5
722,290 + +0.3
722,310 - -0.9
722,346 + -0.5
722,384 - -1.2
722,397 + -0.6
722,411 - +0.7
722,412 + +0.9
722,420 - -0.5
722,421 + -0.6
722,431 + +1.1
722,432 + +0.1
722,434 - -1.8
722,711 + +0.8
722,866 + 16598 mRNA_8230 0.12 -3.7
723,279 - 16598 mRNA_8230 0.32 -1.5
723,292 - 16598 mRNA_8230 0.32 -0.8
723,305 - 16598 mRNA_8230 0.33 -1.0
723,312 + 16598 mRNA_8230 0.33 -0.8
723,563 + 16598 mRNA_8230 0.46 -1.0
723,725 + 16598 mRNA_8230 0.54 -2.0
723,728 - 16598 mRNA_8230 0.54 +0.0
724,317 - 16598 mRNA_8230 0.83 -1.2
724,584 - +0.0
724,753 - +1.0
724,908 + +0.0
724,914 - +1.2
724,917 - -0.3
724,923 + +0.4
725,046 + +0.3
725,094 - +0.4
725,191 - +0.8
725,210 + +0.8
725,238 - -3.2
725,241 - -0.8
725,363 + -0.6
725,641 + 16599 mRNA_8231 0.24 -2.8
725,670 - 16599 mRNA_8231 0.25 +0.8

Or see this region's nucleotide sequence