Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8488

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16855 and 16856 are separated by 328 nucleotides16856 and 16857 are separated by 221 nucleotides mRNA_8487: 16855 - Hypothetical Protein, at 1,342,894 to 1,343,446 16855 mRNA_8488: 16856 - K03135 TAF11 transcription initiation factor TFIID subunit 11, at 1,343,775 to 1,344,763 16856 mRNA_8489: 16857 - K17768 TOM70 mitochondrial import receptor subunit TOM70, at 1,344,985 to 1,347,590 16857

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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1,342,890 - +0.8
1,342,938 + -1.6
1,342,966 + 16855 mRNA_8487 0.13 +0.5
1,343,557 - +0.3
1,343,633 - +0.1
1,343,643 + +0.5
1,344,813 + -2.5
1,344,858 - -2.5
1,344,864 - -2.1
1,344,914 - +0.1
1,344,921 + +0.5
1,344,952 + -0.6
1,344,954 - -0.0
1,344,964 - -0.9
1,344,977 + -0.9
1,344,979 + -0.9
1,345,129 + +0.1
1,345,203 - +0.9
1,345,263 - 16857 mRNA_8489 0.11 -1.5
1,345,317 + 16857 mRNA_8489 0.13 -0.0
1,345,395 - 16857 mRNA_8489 0.16 -1.9
1,345,633 + 16857 mRNA_8489 0.25 +0.1

Or see this region's nucleotide sequence