Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_9

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8377 and 8378 are separated by 267 nucleotides mRNA_9: 8377 - Hypothetical Protein, at 28,711 to 29,599 8377 mRNA_10: 8378 - Hypothetical Protein, at 29,867 to 30,741 8378

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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27,787 - +0.4
27,857 - -1.1
28,321 - -0.3
28,630 + +1.4
28,636 + -1.2
28,737 + -0.4
28,937 + 8377 mRNA_9 0.25 -0.9
29,049 - 8377 mRNA_9 0.38 +0.1
29,062 - 8377 mRNA_9 0.39 -0.1
29,112 + 8377 mRNA_9 0.45 +1.0
29,220 - 8377 mRNA_9 0.57 +0.2
29,316 + 8377 mRNA_9 0.68 -2.6
29,501 + 8377 mRNA_9 0.89 -0.5
29,659 + -1.4
29,931 - +0.0
29,938 + +1.6
29,943 - -2.6
30,094 - 8378 mRNA_10 0.26 -1.3
30,106 + 8378 mRNA_10 0.27 +0.8
30,136 + 8378 mRNA_10 0.31 -1.1
30,170 - 8378 mRNA_10 0.35 -1.9
30,178 + 8378 mRNA_10 0.36 +1.5
30,369 + 8378 mRNA_10 0.57 -1.7

Or see this region's nucleotide sequence