Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_231

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8599 and 8600 are separated by 259 nucleotides8600 and 8601 are separated by 155 nucleotides mRNA_231: 8599 - HMMPfam-Urb2/Npa2 family-PF10441,SUPERFAMILY--SSF48371, at 569,811 to 575,068 8599 mRNA_232: 8600 - KOG1773 Stress responsive protein, at 575,328 to 575,800 8600 mRNA_233: 8601 - K06287 maf septum formation protein, at 575,956 to 577,138 8601

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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568,882 + +0.1
569,515 + -1.0
569,574 + +0.1
569,582 - -1.2
569,589 - -0.3
569,605 - +0.4
569,610 - -1.3
569,760 - -1.5
572,027 + 8599 mRNA_231 0.42 -0.6
575,312 - -0.0
575,673 - 8600 mRNA_232 0.73 +0.9
575,789 + -1.9
575,911 - +0.0
575,913 + -0.0

Or see this region's nucleotide sequence