Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_394

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8761 and 8762 are separated by 179 nucleotides8762 and 8763 are separated by 520 nucleotides mRNA_393: 8761 - Hypothetical Protein, at 915,771 to 916,536 8761 mRNA_394: 8762 - KOG0714 Molecular chaperone (DnaJ superfamily), at 916,716 to 918,157 8762 mRNA_395: 8763 - KOG2262 Sexual differentiation process protein ISP4, at 918,678 to 921,418 8763

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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915,752 - +1.1
915,775 + -0.6
916,040 - 8761 mRNA_393 0.35 -0.2
916,347 + 8761 mRNA_393 0.75 +0.1
916,516 + -0.8
917,077 - 8762 mRNA_394 0.25 -2.2
917,406 - 8762 mRNA_394 0.48 +0.2
917,418 - 8762 mRNA_394 0.49 +0.7
917,545 - 8762 mRNA_394 0.57 -0.7
917,588 - 8762 mRNA_394 0.60 +0.3
917,670 + 8762 mRNA_394 0.66 -0.3
917,674 - 8762 mRNA_394 0.66 -1.7
918,268 - -2.0
918,387 - -0.9
918,397 + -0.8
918,410 - -2.5
918,412 - +1.3
918,437 + -0.7
918,548 + -0.4
918,563 - -0.8
918,692 - +1.3
918,693 - -0.1
918,693 + +0.2
918,713 + +0.2
918,817 + -0.0
918,843 + -1.1
918,994 - 8763 mRNA_395 0.12 -1.4
918,997 - 8763 mRNA_395 0.12 -1.5
919,147 - 8763 mRNA_395 0.17 -0.9

Or see this region's nucleotide sequence