Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_399

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8766 and 8767 are separated by 172 nucleotides8767 and 8768 are separated by 338 nucleotides mRNA_398: 8766 - KOG1305 Amino acid transporter protein, at 925,990 to 928,121 8766 mRNA_399: 8767 - K06874 K06874 zinc finger protein, at 928,294 to 930,157 8767 mRNA_400: 8768 - K00728 POMT dolichyl-phosphate-mannose-protein mannosyltransferase, at 930,496 to 933,710 8768

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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927,500 + 8766 mRNA_398 0.71 +1.1
928,090 + +0.1
928,105 + -1.4
930,429 + +0.4
930,568 - +0.6
930,689 - +0.4
930,711 + -1.4
930,727 + -2.0
930,882 - 8768 mRNA_400 0.12 +0.2
931,004 + 8768 mRNA_400 0.16 -0.1
931,143 + 8768 mRNA_400 0.20 -2.7
931,149 + 8768 mRNA_400 0.20 -0.9

Or see this region's nucleotide sequence