Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_413

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8779 and 8780 are separated by 688 nucleotides8780 and 8781 are separated by 96 nucleotides8781 and 8782 are separated by 369 nucleotides mRNA_411: 8779 - K12862 PLRG1, PRL1, PRP46 pleiotropic regulator 1, at 962,864 to 964,890 8779 mRNA_412: 8780 - Hypothetical Protein, at 965,579 to 965,773 8780 mRNA_413: 8781 - K00227 SC5DL, ERG3 Delta7-sterol 5-desaturase, at 965,870 to 967,292 8781 mRNA_414: 8782 - KOG4170 2-enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase/Peroxisomal 3-ketoacyl-CoA-thiolase, sterol-binding domain and related enzymes, at 967,662 to 968,667 8782

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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964,953 + -0.8
964,954 + -0.1
964,960 + -1.2
965,167 - +0.2
965,201 - -0.4
965,315 + -0.7
965,355 + -3.0
965,360 - -0.3
965,364 + -1.8
965,369 + +0.5
965,374 + -1.1
965,375 + -1.7
965,376 + -0.0
965,378 + +0.3
965,381 + +0.9
965,382 + -0.1
965,386 + -1.0
965,390 - -1.2
965,392 - -4.9
965,395 - -1.0
965,396 + -0.2
965,396 - -0.6
965,405 + +0.2
965,410 - -0.8
965,418 - +1.1
965,429 + +2.3
965,778 + -0.8
966,155 + 8781 mRNA_413 0.20 -0.0
967,092 - 8781 mRNA_413 0.86 -1.0
967,425 + -0.9
967,575 + -1.8
967,697 - -1.8
967,699 + -1.5
967,733 + -1.8
967,880 - 8782 mRNA_414 0.22 -0.7
967,886 + 8782 mRNA_414 0.22 -0.2
967,886 + 8782 mRNA_414 0.22 +0.3
967,888 + 8782 mRNA_414 0.22 -0.2

Or see this region's nucleotide sequence