Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_419

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8786 and 8787 are separated by 89 nucleotides8787 and 8788 are separated by 266 nucleotides mRNA_418: 8786 - KOG2308 Phosphatidic acid-preferring phospholipase A1, contains DDHD domain, at 976,232 to 979,073 8786 mRNA_419: 8787 - HMMPfam-Major Facilitator Superfamily-PF07690,ProSiteProfiles-Major facilitator superfamily (MFS) profile.-PS50850,SUPERFAMILY--SSF103473, at 979,163 to 981,247 8787 mRNA_420: 8788 - K11209 yghU, yfcG GSH-dependent disulfide-bond oxidoreductase, at 981,514 to 982,786 8788

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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978,189 + 8786 mRNA_418 0.69 -0.6
978,226 + 8786 mRNA_418 0.70 +0.2
978,300 - 8786 mRNA_418 0.73 -3.3
978,782 - 8786 mRNA_418 0.90 +2.5
979,436 + 8787 mRNA_419 0.13 +1.3
979,436 + 8787 mRNA_419 0.13 +0.7
979,674 + 8787 mRNA_419 0.25 -0.3
979,717 - 8787 mRNA_419 0.27 -2.6
979,853 + 8787 mRNA_419 0.33 -2.3
980,002 + 8787 mRNA_419 0.40 -2.2
980,280 + 8787 mRNA_419 0.54 +2.0
980,578 - 8787 mRNA_419 0.68 +2.7
980,696 - 8787 mRNA_419 0.74 -0.1
980,702 + 8787 mRNA_419 0.74 -0.1
980,996 + 8787 mRNA_419 0.88 -0.4
981,004 - 8787 mRNA_419 0.88 +0.4
981,013 - 8787 mRNA_419 0.89 -0.7
981,135 + +0.1
981,140 + +0.3
981,141 - +0.2
981,147 + -0.0
981,156 - -1.2
981,158 + -0.4
981,306 + +1.8
981,306 + -0.8
981,440 + +1.8
981,589 + +0.5
981,631 - -2.3
981,875 + 8788 mRNA_420 0.28 -1.0
981,882 - 8788 mRNA_420 0.29 -0.4
981,984 - 8788 mRNA_420 0.37 -0.9

Or see this region's nucleotide sequence