Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_421

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8788 and 8789 are separated by 248 nucleotides8789 and 8790 are separated by 415 nucleotides mRNA_420: 8788 - K11209 yghU, yfcG GSH-dependent disulfide-bond oxidoreductase, at 981,514 to 982,786 8788 mRNA_421: 8789 - K11209 yghU, yfcG GSH-dependent disulfide-bond oxidoreductase, at 983,035 to 984,157 8789 mRNA_422: 8790 - KOG0911 Glutaredoxin-related protein, at 984,573 to 985,710 8790

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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982,477 - 8788 mRNA_420 0.76 -1.1
982,595 - 8788 mRNA_420 0.85 -2.0
982,629 + 8788 mRNA_420 0.88 +1.1
982,878 + -0.6
982,903 - +0.4
982,924 + -0.2
982,926 - +0.4
982,930 + -1.7
982,941 + -0.1
982,941 - +0.1
982,945 - +0.9
982,971 + +0.3
983,087 - +1.1
983,240 - 8789 mRNA_421 0.18 +0.4
983,369 + 8789 mRNA_421 0.30 +1.8
983,645 + 8789 mRNA_421 0.54 +0.4
983,796 - 8789 mRNA_421 0.68 +0.2
983,924 - 8789 mRNA_421 0.79 +0.5
984,063 - +0.1
984,096 + +0.2
984,206 - -1.1
984,485 - -1.6
984,515 + -0.4
984,647 + -0.1

Or see this region's nucleotide sequence