Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_524

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8891 and 8892 are separated by 283 nucleotides8892 and 8893 are separated by 411 nucleotides mRNA_523: 8891 - K11644 SIN3A paired amphipathic helix protein Sin3a, at 1,244,383 to 1,249,643 8891 mRNA_524: 8892 - KOG0519 Sensory transduction histidine kinase, at 1,249,927 to 1,253,514 8892 mRNA_525: 8893 - K01265 map methionyl aminopeptidase, at 1,253,926 to 1,255,834 8893

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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1,249,220 + -0.7
1,249,497 - +0.0
1,249,520 + +1.4
1,249,735 + -1.4
1,249,746 - +0.9
1,249,762 + +0.4
1,249,774 - +0.8
1,249,965 + +0.0
1,249,973 + -1.3
1,250,098 - +0.9
1,250,111 + -2.3
1,250,251 + -0.2
1,250,267 - -1.7
1,250,294 - 8892 mRNA_524 0.10 -0.4
1,250,301 + 8892 mRNA_524 0.10 -0.3
1,250,308 + 8892 mRNA_524 0.11 -1.2
1,250,860 - 8892 mRNA_524 0.26 +0.5
1,250,898 - 8892 mRNA_524 0.27 -0.6
1,251,293 - 8892 mRNA_524 0.38 -2.3
1,252,494 + 8892 mRNA_524 0.72 +1.7
1,252,505 - 8892 mRNA_524 0.72 +0.5
1,252,750 + 8892 mRNA_524 0.79 -1.2
1,253,504 - +0.8
1,253,593 - -2.6
1,253,793 + +0.4

Or see this region's nucleotide sequence