Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_535

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8902 and 8903 are separated by 230 nucleotides8903 and 8904 are separated by 205 nucleotides mRNA_534: 8902 - K08054 CANX calnexin, at 1,270,222 to 1,272,470 8902 mRNA_535: 8903 - HMMPfam-Ribosomal protein S21-PF01165,TIGRFAM-S21p ribosomal protein S21-TIGR00030, at 1,272,701 to 1,273,396 8903 mRNA_536: 8904 - K09548 PFDN1 prefoldin subunit 1, at 1,273,602 to 1,274,230 8904

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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1,272,228 + 8902 mRNA_534 0.89 -1.7
1,272,293 - +0.7
1,272,344 + -0.2
1,272,695 - +1.2
1,273,538 - -1.2
1,273,543 - +1.0
1,273,545 + -1.6
1,273,546 + +1.7
1,273,549 - -0.7
1,273,551 + -0.8
1,273,682 + 8904 mRNA_536 0.13 -1.6
1,273,697 - 8904 mRNA_536 0.15 -2.0
1,273,697 - 8904 mRNA_536 0.15 -1.5
1,274,265 - +0.5

Or see this region's nucleotide sequence