Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_727

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9094 and 9095 are separated by 607 nucleotides9095 and 9096 are separated by 282 nucleotides mRNA_726: 9094 - HMMPfam-Ferritin-like domain-PF13668, at 1,727,840 to 1,729,202 9094 mRNA_727: 9095 - HMMPfam-Peroxidase, family 2-PF01328,ProSiteProfiles-Heme haloperoxidase family profile.-PS51405,SUPERFAMILY--SSF47571, at 1,729,810 to 1,731,316 9095 mRNA_728: 9096 - K18669 DYRK2_3_4 dual specificity tyrosine-phosphorylation-regulated kinase 2/3/4, at 1,731,599 to 1,733,273 9096

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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1,729,336 + -2.0
1,729,581 - -0.2
1,729,743 + -1.1
1,729,754 + +0.2
1,730,301 + 9095 mRNA_727 0.33 +0.4
1,730,692 + 9095 mRNA_727 0.59 +0.1
1,730,803 + 9095 mRNA_727 0.66 -0.7
1,730,821 - 9095 mRNA_727 0.67 +0.2
1,731,284 - -0.8
1,731,290 + +2.4
1,731,695 + +0.7
1,731,956 + 9096 mRNA_728 0.21 -2.3
1,732,043 + 9096 mRNA_728 0.27 -0.9
1,732,143 - 9096 mRNA_728 0.32 +0.2
1,732,145 - 9096 mRNA_728 0.33 +0.4

Or see this region's nucleotide sequence