Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_735

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9102 and 9103 are separated by 755 nucleotides9103 and 9104 are separated by 153 nucleotides mRNA_734: 9102 - K08149 SLC2A12, GLUT12 MFS transporter, SP family, solute carrier family 2 (facilitated glucose transporter), member 12, at 1,750,869 to 1,753,209 9102 mRNA_735: 9103 - KOG0175 20S proteasome, regulatory subunit beta type PSMB5/PSMB8/PRE2, at 1,753,965 to 1,755,090 9103 mRNA_736: 9104 - K00034 gdh glucose 1-dehydrogenase, at 1,755,244 to 1,756,596 9104

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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1,752,987 - +0.0
1,753,267 - +0.2
1,753,288 + -0.4
1,753,292 + -0.1
1,753,300 + -0.5
1,753,360 - -1.5
1,753,406 - -1.6
1,753,532 - -1.6
1,753,689 - -0.6
1,753,793 - +0.1
1,753,834 + -0.9
1,753,844 - -0.2
1,754,311 + 9103 mRNA_735 0.31 -1.6
1,754,450 + 9103 mRNA_735 0.43 -1.8
1,754,489 + 9103 mRNA_735 0.47 +1.7
1,754,587 - 9103 mRNA_735 0.55 +0.7
1,754,720 - 9103 mRNA_735 0.67 +1.2
1,754,751 - 9103 mRNA_735 0.70 -0.1
1,754,831 - 9103 mRNA_735 0.77 -0.6
1,755,560 - 9104 mRNA_736 0.23 +0.1
1,755,592 - 9104 mRNA_736 0.26 -2.3
1,755,984 - 9104 mRNA_736 0.55 -0.4

Or see this region's nucleotide sequence