Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_757

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9124 and 9125 are separated by 359 nucleotides9125 and 9126 are separated by 52 nucleotides mRNA_756: 9124 - HMMPfam-Protein of unknown function (DUF3074)-PF11274,SUPERFAMILY--SSF55961, at 1,802,998 to 1,803,902 9124 mRNA_757: 9125 - K01493 comEB dCMP deaminase, at 1,804,262 to 1,807,266 9125 mRNA_758: 9126 - K20404 DEPDC5 DEP domain-containing protein 5, at 1,807,319 to 1,813,069 9126

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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1,803,618 + 9124 mRNA_756 0.69 -1.3
1,803,638 + 9124 mRNA_756 0.71 -0.6
1,803,727 + 9124 mRNA_756 0.81 +0.9
1,803,756 + 9124 mRNA_756 0.84 +0.7
1,803,880 + -1.5
1,803,914 + -0.8
1,803,927 + -1.9
1,803,928 + +0.0
1,803,944 + -0.9
1,804,037 - -0.1
1,804,210 - -0.0
1,804,362 - -1.8
1,804,495 - -0.1
1,804,694 + 9125 mRNA_757 0.14 +0.4
1,804,742 + 9125 mRNA_757 0.16 -0.2
1,805,104 - 9125 mRNA_757 0.28 -1.7
1,805,110 + 9125 mRNA_757 0.28 -2.7
1,805,359 - 9125 mRNA_757 0.37 +0.0
1,805,417 + 9125 mRNA_757 0.38 +0.2
1,805,647 - 9125 mRNA_757 0.46 -2.0
1,805,664 + 9125 mRNA_757 0.47 -1.8
1,805,805 + 9125 mRNA_757 0.51 +0.2
1,805,805 - 9125 mRNA_757 0.51 -1.3
1,805,834 + 9125 mRNA_757 0.52 +2.3
1,805,956 - 9125 mRNA_757 0.56 -0.8
1,805,981 + 9125 mRNA_757 0.57 -1.6
1,806,100 - 9125 mRNA_757 0.61 -2.8
1,806,440 + 9125 mRNA_757 0.72 -0.1
1,806,770 - 9125 mRNA_757 0.83 -1.4
1,807,142 - -1.2
1,807,169 + -0.4
1,807,317 - +0.8
1,807,392 + -0.1
1,808,184 + 9126 mRNA_758 0.15 +0.3

Or see this region's nucleotide sequence