Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_791

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9158 and 9159 are separated by 203 nucleotides9159 and 9160 are separated by 676 nucleotides mRNA_790: 9158 - HMMPfam-C2 domain-PF00168,ProSiteProfiles-C2 domain profile.-PS50004,SMART-Protein kinase C conserved region 2 (CalB)-SM00239,SUPERFAMILY--SSF49562, at 1,877,966 to 1,880,180 9158 mRNA_791: 9159 - HMMPfam-Svf1-like-PF08622,SUPERFAMILY--SSF159245, at 1,880,384 to 1,881,933 9159 mRNA_792: 9160 - SUPERFAMILY--SSF52047, at 1,882,610 to 1,885,727 9160

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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1,879,496 + 9158 mRNA_790 0.69 +0.1
1,879,753 + 9158 mRNA_790 0.81 -2.5
1,879,787 + 9158 mRNA_790 0.82 +0.7
1,879,791 + 9158 mRNA_790 0.82 -1.1
1,880,359 - -1.8
1,881,957 - -2.4
1,882,272 - -1.4
1,882,308 + -1.4
1,882,387 + +0.6
1,882,390 - -3.1
1,882,810 + +0.5

Or see this region's nucleotide sequence