Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_814

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9181 and 9182 are separated by 522 nucleotides9182 and 9183 are separated by 127 nucleotides mRNA_813: 9181 - KOG1515 Arylacetamide deacetylase, at 1,934,568 to 1,937,031 9181 mRNA_814: 9182 - K15075 MET18, MMS19 DNA repair/transcription protein MET18/MMS19, at 1,937,554 to 1,941,739 9182 mRNA_815: 9183 - K04555 UBE2G2, UBC7 ubiquitin-conjugating enzyme E2 G2, at 1,941,867 to 1,942,865 9183

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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1,936,623 - 9181 mRNA_813 0.83 +0.2
1,936,632 + 9181 mRNA_813 0.84 +0.1
1,936,651 - 9181 mRNA_813 0.85 -1.3
1,936,689 + 9181 mRNA_813 0.86 -0.5
1,936,700 + 9181 mRNA_813 0.87 -0.2
1,936,701 - 9181 mRNA_813 0.87 -0.4
1,936,806 + +0.1
1,936,954 - -1.3
1,936,994 - -0.8
1,937,086 - -1.3
1,937,095 - -1.2
1,937,106 + -1.9
1,937,113 - +0.5
1,937,115 + -0.1
1,937,147 - +0.9
1,937,160 + -2.5
1,937,210 + -1.2
1,937,293 - -0.5
1,937,301 - -0.5
1,937,305 + -1.0
1,937,308 + +0.7
1,937,311 - -1.3
1,937,342 - -2.1
1,937,351 + +0.9
1,937,371 - +0.9
1,937,419 - -0.5
1,937,421 - +0.4
1,937,427 + -0.6
1,941,795 + +0.7
1,941,963 + -4.2
1,942,088 + 9183 mRNA_815 0.22 -1.1
1,942,232 - 9183 mRNA_815 0.37 -3.3

Or see this region's nucleotide sequence