Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_930

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9298 and 9299 are separated by 237 nucleotides mRNA_930: 9298 - K00861 RFK, FMN1 riboflavin kinase, at 359 to 1,600 9298 mRNA_931: 9299 - K14794 RRP12 ribosomal RNA-processing protein 12, at 1,838 to 6,021 9299

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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1 + +1.2
1 + -2.4
1 + -0.8
1 + -0.2
1 + +2.9
2 + +0.0
2 + +0.2
5 + +0.4
18 + +0.2
30 + -0.1
37 + -0.4
37 + -1.1
41 + +0.4
42 + -1.6
44 + +1.8
49 + -1.8
49 + -2.3
50 + +0.4
54 + -0.3
58 - +0.1
60 - -0.1
60 + +0.3
60 - +0.1
61 - +0.9
61 + -1.4
63 + +0.7
63 + +0.4
63 + -1.0
63 + -0.0
63 + -0.4
63 + -2.2
64 + -1.1
66 - -1.0
66 + -1.9
70 + +0.0
70 + +0.7
70 - -0.1
71 + -0.9
73 + -0.5
75 - +1.5
77 - +0.4
78 + -2.3
78 - -0.9
78 + +0.1
78 + +0.6
78 + -1.2
78 + -0.3
78 + +0.4
78 + +0.6
78 + -0.5
79 + -0.3
81 - +1.2
81 - +0.4
82 + +0.4
85 + +0.1
104 + +0.5
126 + -0.0
126 + -0.1
128 - +1.0
135 + -2.2
142 + +0.9
150 + -0.2
154 + +0.0
157 + -0.2
171 - +0.7
171 + -1.2
172 + -1.7
172 + +1.8
175 - -0.4
176 - -0.2
177 - -2.7
177 - +0.4
191 - +0.9
192 + -0.1
192 + -0.7
192 + +0.4
193 + -0.9
193 + +0.2
193 + -2.3
198 - -0.6
218 + -0.0
225 + -0.7
235 + -0.8
242 + +0.1
263 - -0.6
293 + -1.6
303 + -0.6
333 - -0.1
339 - -1.7
348 + +0.3
349 + -2.1
377 - +0.1
381 - -0.6
469 + -1.5
487 - 9298 mRNA_930 0.10 -4.4
722 + 9298 mRNA_930 0.29 -0.9
1,641 - +2.4
1,656 - -0.9
1,768 - -0.5
1,778 - +1.0
1,794 + -0.6

Or see this region's nucleotide sequence