Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_943

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9310 and 9311 are separated by 187 nucleotides9311 and 9312 are separated by 705 nucleotides mRNA_942: 9310 - KOG1743 Ferric reductase-like proteins, at 29,520 to 30,621 9310 mRNA_943: 9311 - K05759 PFN profilin, at 30,809 to 31,667 9311 mRNA_944: 9312 - Hypothetical Protein, at 32,373 to 33,071 9312

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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30,419 + 9310 mRNA_942 0.82 +0.7
30,466 - 9310 mRNA_942 0.86 -0.3
30,488 + 9310 mRNA_942 0.88 +0.1
30,714 - -1.1
30,731 + -0.0
30,762 - -1.2
30,764 - +1.3
30,766 - +1.6
30,772 - -2.0
30,773 - +2.1
30,784 - +0.3
30,784 - +1.1
30,792 + -0.5
30,794 + -0.6
31,853 + +0.0
32,072 - -0.3
32,527 + 9312 mRNA_944 0.22 +0.2
32,551 - 9312 mRNA_944 0.25 +1.3

Or see this region's nucleotide sequence