Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1036

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9403 and 9404 are separated by 152 nucleotides9404 and 9405 are separated by 113 nucleotides mRNA_1035: 9403 - Hypothetical Protein, at 251,182 to 253,017 9403 mRNA_1036: 9404 - K12590 RRP46, EXOSC5 exosome complex component RRP46, at 253,170 to 254,250 9404 mRNA_1037: 9405 - K12160 SUMO, SMT3 small ubiquitin-related modifier, at 254,364 to 255,172 9405

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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252,410 + 9403 mRNA_1035 0.67 +0.1
253,029 + +0.2
253,151 + -1.1
253,269 - -0.7
254,305 - -0.3
254,314 + -1.9
254,353 + -2.5
254,930 + 9405 mRNA_1037 0.70 -0.6
255,185 - +0.2

Or see this region's nucleotide sequence