Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1055

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt mRNA_1055: 9423 - KOG0590 Checkpoint kinase and related serine/threonine protein kinases, at 292,025 to 293,259 9423

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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291,083 - +0.4
291,088 - +0.8
291,093 - -0.2
291,102 + +0.5
291,146 - +0.3
291,157 - +0.2
291,158 + +0.8
291,199 + -0.2
291,253 - -1.2
291,269 + -1.7
291,321 - +1.6
291,383 - +0.5
291,415 + -1.1
291,429 + +0.1
291,444 - -0.1
291,448 - +0.1
291,460 + +0.4
291,460 + -1.3
291,462 - +0.6
291,467 + -1.5
291,482 + +0.2
291,500 + +0.6
291,513 + +1.5
291,627 - -0.1
291,633 - +0.9
291,642 + +0.3
291,662 - -0.0
291,664 - -2.2
291,668 + +0.1
291,669 + -0.0
291,681 + +0.7
291,685 + +0.6
291,685 - -2.6
291,739 + +0.0
291,740 + -0.9
291,743 - -2.2
291,747 + -0.5
291,748 - -1.8
291,752 - +0.5
291,761 - -1.3
291,767 - -1.2
291,778 - -0.4
291,779 + -0.7
291,779 + +0.3
291,797 + +0.2
291,801 + +0.0
291,809 - +0.7
291,813 + -0.3
291,816 - +0.2
291,845 - -0.2
291,850 - +0.2
291,853 + +0.6
291,867 + +1.7
291,869 - -1.4
291,873 - +0.8
291,873 + -1.4
291,889 - +0.4
291,903 + -0.5
291,935 + -0.2
291,987 - +0.7
292,012 + -2.1
292,017 + -1.5
292,036 + -0.2
292,040 + +0.5
292,644 + 9423 mRNA_1055 0.50 -0.2
292,893 + 9423 mRNA_1055 0.70 +1.2
293,339 + -0.7
293,344 + -2.3
293,346 - +0.3
293,349 + -1.4
293,488 + +0.0
293,495 - +0.8
293,500 + +0.1
293,584 + -1.4
293,589 - +0.1
293,596 - -1.2
293,650 + -2.0
293,658 + -2.1
294,211 - -0.4

Or see this region's nucleotide sequence