Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1225

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9592 and 9593 are separated by 146 nucleotides9593 and 9594 are separated by 421 nucleotides mRNA_1224: 9592 - BLAST catalytic [Ascochyta rabiei], at 690,092 to 691,295 9592 mRNA_1225: 9593 - KOG2195 Transferrin receptor and related proteins containing the protease-associated (PA) domain, at 691,442 to 693,362 9593 mRNA_1226: 9594 - K01262 pepP Xaa-Pro aminopeptidase, at 693,784 to 696,236 9594

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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690,457 + 9592 mRNA_1224 0.30 -0.7
690,466 - 9592 mRNA_1224 0.31 -1.4
690,594 - 9592 mRNA_1224 0.42 +0.6
690,760 - 9592 mRNA_1224 0.55 +0.8
691,480 + +1.0
691,775 - 9593 mRNA_1225 0.17 -2.4
691,821 - 9593 mRNA_1225 0.20 -0.1
692,070 + 9593 mRNA_1225 0.33 -0.0
692,201 - 9593 mRNA_1225 0.40 +1.5
692,337 + 9593 mRNA_1225 0.47 -0.4
692,478 - 9593 mRNA_1225 0.54 +0.5
692,502 - 9593 mRNA_1225 0.55 -0.2
692,766 - 9593 mRNA_1225 0.69 -1.9
693,224 + -2.4
693,390 + -0.1
693,395 - -0.6
693,521 - -0.7
693,523 + +0.6
693,587 + +0.5
693,710 + +0.1
693,815 - +1.0
694,254 - 9594 mRNA_1226 0.19 -0.5
694,281 + 9594 mRNA_1226 0.20 -1.1
694,346 + 9594 mRNA_1226 0.23 +1.4

Or see this region's nucleotide sequence