Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1271

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9638 and 9639 are separated by 483 nucleotides9639 and 9640 are separated by 756 nucleotides mRNA_1270: 9638 - KOG0254 Predicted transporter (major facilitator superfamily), at 800,593 to 802,936 9638 mRNA_1271: 9639 - K05349 bglX beta-glucosidase, at 803,420 to 806,888 9639 mRNA_1272: 9640 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 807,645 to 808,575 9640

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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802,423 + 9638 mRNA_1270 0.78 +1.2
802,994 + -1.2
803,005 + +1.5
803,020 + -0.8
803,137 - -0.9
803,141 + -1.3
803,158 + -1.2
803,183 - -1.1
803,199 - -1.6
803,296 + -1.3
803,302 + +0.0
803,311 - -0.1
803,333 + +0.7
803,456 - +0.2
803,463 + +0.6
803,464 - +0.3
803,465 - +0.0
803,623 - -0.3
803,787 + 9639 mRNA_1271 0.11 +2.4
803,864 + 9639 mRNA_1271 0.13 +0.5
803,894 - 9639 mRNA_1271 0.14 +1.4
803,960 - 9639 mRNA_1271 0.16 +0.1
804,009 - 9639 mRNA_1271 0.17 -0.8
804,049 + 9639 mRNA_1271 0.18 +0.5
804,067 + 9639 mRNA_1271 0.19 -0.8
804,188 + 9639 mRNA_1271 0.22 -0.0
804,473 + 9639 mRNA_1271 0.30 +2.0
804,613 + 9639 mRNA_1271 0.34 -1.7
804,616 - 9639 mRNA_1271 0.34 -1.9
804,762 - 9639 mRNA_1271 0.39 -0.4
804,794 - 9639 mRNA_1271 0.40 -1.4
804,864 + 9639 mRNA_1271 0.42 -0.7
804,979 - 9639 mRNA_1271 0.45 +0.8
805,215 + 9639 mRNA_1271 0.52 -1.4
805,246 + 9639 mRNA_1271 0.53 -1.9
805,488 + 9639 mRNA_1271 0.60 -0.2
805,625 + 9639 mRNA_1271 0.64 +0.5
805,652 + 9639 mRNA_1271 0.64 +0.2
805,802 + 9639 mRNA_1271 0.69 -0.8
805,805 - 9639 mRNA_1271 0.69 -0.2
805,968 + 9639 mRNA_1271 0.73 -0.1
806,102 - 9639 mRNA_1271 0.77 -0.6
806,252 - 9639 mRNA_1271 0.82 -0.7
806,327 + 9639 mRNA_1271 0.84 -0.9
806,464 + 9639 mRNA_1271 0.88 +0.6
806,547 - -2.6
806,674 + -1.8
806,676 - +1.1
806,830 + -0.9
807,271 + +0.5
807,273 - +0.1
807,294 - -2.4
807,296 - +0.2
807,300 + +0.6
807,300 + +1.1
807,388 + -0.0
807,399 + -0.0
807,412 - -1.8
807,425 + +0.2
807,545 - -3.1
807,663 + -0.0
807,706 - -0.2
807,714 - +0.8
807,864 + 9640 mRNA_1272 0.24 +0.3
807,870 + 9640 mRNA_1272 0.24 -0.1

Or see this region's nucleotide sequence