Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1325

Experiment: Sorted Low BODIPY Gate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt mRNA_1325: 9693 - KOG1960 Predicted RNA-binding protein, contains KH domains, at 934,914 to 938,027 9693

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
remove
933,927 + -0.7
933,938 - +0.4
933,942 - -0.8
933,984 + +0.7
933,990 - -1.1
934,003 - +1.7
934,284 + +2.0
934,292 - +0.2
934,322 + +1.2
934,378 - +0.9
934,416 - +0.5
934,417 + -1.8
934,701 + +0.5
934,734 + +0.8
934,811 - -0.3
935,144 - -1.4
935,150 + +0.6
935,270 + 9693 mRNA_1325 0.11 +0.6
935,275 - 9693 mRNA_1325 0.12 +0.0
935,279 - 9693 mRNA_1325 0.12 -1.2
935,390 - 9693 mRNA_1325 0.15 +0.7
935,433 - 9693 mRNA_1325 0.17 -4.6
936,305 + 9693 mRNA_1325 0.45 -0.1
936,365 + 9693 mRNA_1325 0.47 -2.0
936,430 - 9693 mRNA_1325 0.49 -2.6
936,605 - 9693 mRNA_1325 0.54 -0.9
936,730 - 9693 mRNA_1325 0.58 -4.1
936,732 + 9693 mRNA_1325 0.58 -1.6
937,097 + 9693 mRNA_1325 0.70 -1.0
937,386 + 9693 mRNA_1325 0.79 -0.2
937,393 + 9693 mRNA_1325 0.80 -0.2
937,498 - 9693 mRNA_1325 0.83 -0.6
937,540 - 9693 mRNA_1325 0.84 -0.8
937,569 - 9693 mRNA_1325 0.85 -1.3
937,635 + 9693 mRNA_1325 0.87 +0.4
937,728 + -1.3
937,741 + -0.9
937,754 - -2.5
937,760 - -1.1
937,763 - +0.9
937,803 + -0.1
937,806 - +1.3
937,832 - -0.9
937,838 - -1.1
937,885 + -0.4
937,898 - -0.2
937,954 - +0.6
938,042 - -0.6
938,046 - -1.9
938,050 - -0.3
938,054 + -1.2
938,058 + -0.2
938,061 - -0.0
938,066 - +1.1
938,073 - +0.7
938,094 - -0.8
938,113 - +0.0
938,116 + -1.2
938,134 + +1.9
938,134 + -2.7
938,136 - -1.3
938,141 - -2.1
938,172 - +0.6
938,177 - -3.1
938,179 - -0.1
938,183 - -1.1
938,186 - -1.8
938,190 - +0.3
938,190 - -0.0
938,190 - +0.2
938,190 - -1.2
938,190 - -0.1

Or see this region's nucleotide sequence