Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1384

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9751 and 9752 are separated by 185 nucleotides9752 and 9753 are separated by 453 nucleotides mRNA_1383: 9751 - HMMPfam-Nse4 C-terminal-PF08743,HMMPfam-Binding domain of Nse4/EID3 to Nse3-MAGE-PF15412, at 142,015 to 143,615 9751 mRNA_1384: 9752 - KOG4472 Glycolipid 2-alpha-mannosyltransferase (alpha-1,2-mannosyltransferase), at 143,801 to 145,438 9752 mRNA_1385: 9753 - K06966 K06966 uncharacterized protein, at 145,892 to 146,941 9753

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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144,137 + 9752 mRNA_1384 0.21 -1.5
144,145 + 9752 mRNA_1384 0.21 +1.9
144,283 + 9752 mRNA_1384 0.29 +0.3
144,427 + 9752 mRNA_1384 0.38 +0.2
144,491 - 9752 mRNA_1384 0.42 -0.1
144,730 - 9752 mRNA_1384 0.57 +0.2
144,877 + 9752 mRNA_1384 0.66 +0.8
145,281 - -0.4
145,344 + -0.5
145,463 + +1.3
145,587 + -1.5
145,601 - +0.8
145,605 - +0.2
145,609 + +0.4
145,744 + -1.4
145,748 - +1.0
145,769 + -1.5
145,887 - +0.6
145,896 + -2.3
146,026 - 9753 mRNA_1385 0.13 -2.4
146,077 - 9753 mRNA_1385 0.18 +0.9

Or see this region's nucleotide sequence