Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1595

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9962 and 9963 are separated by 308 nucleotides9963 and 9964 are separated by 380 nucleotides mRNA_1594: 9962 - K16261 YAT yeast amino acid transporter, at 681,003 to 683,049 9962 mRNA_1595: 9963 - K13342 PEX5, PXR1 peroxin-5, at 683,358 to 685,744 9963 mRNA_1596: 9964 - K14557 UTP6 U3 small nucleolar RNA-associated protein 6, at 686,125 to 688,577 9964

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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682,407 - 9962 mRNA_1594 0.69 -1.4
682,409 + 9962 mRNA_1594 0.69 +1.0
682,507 + 9962 mRNA_1594 0.73 -3.4
682,560 - 9962 mRNA_1594 0.76 -1.1
682,689 - 9962 mRNA_1594 0.82 -1.4
682,838 - 9962 mRNA_1594 0.90 +2.5
682,839 - 9962 mRNA_1594 0.90 +1.8
682,861 + -0.3
682,877 + +0.2
682,881 + -0.6
682,979 + +0.1
683,015 + -0.4
683,122 - +1.0
683,122 - -0.6
683,251 + +0.2
683,542 - +0.6
684,513 + 9963 mRNA_1595 0.48 -2.3
684,614 - 9963 mRNA_1595 0.53 -0.1
685,661 + -3.3
685,782 + -0.7
685,796 + +0.3
685,821 - +0.1
685,917 + -0.3
685,922 - -1.9
685,922 - -1.3
685,943 + -2.3
685,954 + +0.3
685,956 - -0.2
685,956 + +0.6
686,111 - -1.4
686,450 + 9964 mRNA_1596 0.13 -3.1

Or see this region's nucleotide sequence